PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614548.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 232aa    MW: 25411.8 Da    PI: 4.7106
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.97e-43591581100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la
  XP_013614548.1  59 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLA 153
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     +++ e
  XP_013614548.1 154 KTQVE 158
                     99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.32358159IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-4259156IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLKMEINGST STATPTASAV AVVSASETTT PVSSPSLTSS PPPSLSPQQP PQPPVVLSPC  60
AACKILRRRC AEKCVLAPYF PPTDPAKFTI AHRVFGASNI IKFLQELPES QRTDAVNSMV  120
YEAGARMRDP VYGCAGAIYH LQRQVSELQA QLAKTQVELV SMQLQRSDLL ELFYKMEQTK  180
LSAQGQQNMS FESSFDSGDE FISSPDEVTN DLGFLEDTNN NNSSMSWWVP LW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738400.0AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614548.11e-173PREDICTED: LOB domain-containing protein 11-like
RefseqXP_013681453.11e-173PREDICTED: LOB domain-containing protein 11-like
SwissprotQ9SK081e-128LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A0D2ZT581e-173A0A0D2ZT58_BRAOL; Uncharacterized protein
STRINGBra011942.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-101LOB domain-containing protein 11